Create a PWM from a multiple sequence alignment

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Enter a ungapped multiple sequence alignment (MSA) in fasta format, as the example below. Every sequence begins with a single-line description, starting with the ">" symbol, followed by the sequence line.

If you do not have an unggaped MSA, we suggest to use the Nomad tool to create one.

>mySeq1
AGACGTC
>mySeq2
AGCGGTC
>mySeq3
AGCCGTC
>mySeq4
AGAGTTC
		

Paste a MSA:

Name:

Create